Welp, I did it. This is a first run at organizing information, depending on if I do anything more with this I might tweak categories and presentation.
A lot of movies will have a bean that applies, or correlates, to multiple categories. I listed movies under the category that they most fundamentally "need," subject to debate, but I had to start somewhere.
So, the fundamental requirements of a movie's magic bean decide where it falls in the general category and subcategory, and the related bean-qualities are linked by color coded lines.
I've left out "Wonderland" movies (Riddick, Scott Pilgrim, Hitchhiker's Guide and Nightmare) and "Muggle" movies, IE movies without magic. Brian suggested there could be a fifth main-category, which is "magic coincidence." That would fit the currently unlisted movies Pulp Fiction, Die Hard, and Silence of the Lambs.
The remaining unlisted "Muggle" movies are Mulholland Drive, Karate Kid, Reservoir Dogs, Chinatown, Dr. Strangelove, Master and Commander, The Hurt Locker, Titanic, Team America, Full Metal Jacket, Apollo 13, and Seven.
Click to enlarge.

Teague Chrystie
I have a tendency to fix your typos.