There are very few perfectly plotted stories in the world. If you pick any story from the epic of Gilgamesh on forward and think on it long enough, you can probably find some aspect of it that stretches credulity, or just doesn't make any damn sense.
The trick is to entertain the audience sufficiently that they just don't care.
It's like Trey says on the podcast sometimes: "I'm going to allow this." You want me to buy that the alien has no apparent metabolic cycle and that its blood is incredibly corrosive to both metal and flesh? Okay, mister fancy-pants Hollywood writer, I'm gonna go along with that for the time being. But you better make it worth my while.
The telling of stories differs from, y'know, fraud in that it's mutually consensual. I, the audience, agree to go along with some basic premise, even if it's nothing more than "Once upon a time." You, the writer, have to uphold your end of our deal by captivating me. If the writer fails to provide the audience with a quantity of entertainment sufficient to justify their investment of attention and credulity, then the writer has failed.
But … y'know … if the audience just crosses its arms and refuses to go along with anything, then it's the audience that's failed.